PUBLICATIONS SCIENTIFIQUES - SCIENTIFIC PUBLICATIONS

1. Marie, D., F. Partensky, S. Jacquet and D. Vaulot. 1997. Enumeration and cell cycle analysis of natural populations of marine picoplankton by flow cytometry using the nucleic acid strain SYBR Green I. Appl. Environ. Microbiol. 63:186-193
2. Jacquet, S., J.-F. Lennon and D. Vaulot. 1998. Application of a compact automatic sea water sampler to high frequency picoplankton studies. Aquat. Microb. Ecol. 14:309-314
3. Jacquet, S., J.-F. Lennon, D. Marie and D. Vaulot. 1998. Picoplankton population dynamics in coastal waters of the NW Mediterranean Sea. Limnol. Oceanogr. 43:1916-1931
4. Christaki, U., S. Jacquet, J. R. Dolan, D. Vaulot and F. Rassoulzadegan. 1999. Growth and grazing on Prochlorococcus and Synechococcus by two marine flagellates. Limnol. Oceanogr. 44:52-62
5. Jacquet, S. and J.-F. Lennon. 1999. Dynamique haute fréquence des populations picoplanctoniques marines. J. Rech. Océanogr. 24:77-86
6. Holtzendorff, J., F. Partensky, S. Jacquet, F. Bruyant, D. Marie, L. Garczarek, I. Mary, D. Vaulot and W. R. Hess. 2001. Diel expression of cell cycle-related genes in synchronized cultures of Prochlorococcus sp. strain PCC 9511. J. Bact. 183:915-920
7. Jacquet, S., F. Partensky, D. Marie, R. Casotti and D. Vaulot. 2001. Cell cycle regulation by light in Prochlorococcus strains. Appl. Environ. Microbiol. 67:782-790
8. Jacquet, S., F. Partensky, J.-F. Lennon and D. Vaulot. 2001. Diel patterns of growth and division in marine picoplankton in culture. J. Phycol. 37:357-369
9. Guillou, L., S. Jacquet, M.-J. Chrétiennot-Dinet. 2001. Grazing impact of two small heterotrophic flagellates on Prochlorococcus and Synechococcus. Aquat. Microb. Ecol. 26:201-207
10. Jacquet, S. 2001. La variabilité physiologique et numérique du picophytoplancton marin à petite échelle de temps. J. Rech. Oceanogr. 26:61-72
11. Jacquet, S., H. Havskum, F. T. Thingstad and D. Vaulot. 2002. Effects of inorganic and organic nutrient enrichment on a coastal microbial community (Isefjord, Denmark). Mar. Ecol. Progr. Ser. 228:3-14
12. Jacquet, S., M. Heldal, D. Iglesias-Rodriguez, A. Larsen, W. Wilson and G. Bratbak. 2002. Flow cytometric analysis of an Emiliana huxleyii bloom terminated by viral infection. Aquat. Microb. Ecol. 27:111-124
13. Jacquet, S., L. Prieur, C. Avois-Jacquet, J.-F. Lennon and D. Vaulot. 2002. Short-timescale variability of picophytoplankton abundance and cellular parameters in surface waters of the Alboran Sea (western Mediterranean). J. Plank. Res. 24:639-655
14. Leboulanger, C., U. Dorigo, S. Jacquet, B. LeBerre, G. Paolini and J.-F. Humbert. 2002. Application of a submersible spectrofluorometer for rapid monitoring of freshwater cyanobacterial blooms: a case study. Aquat. Microb. Ecol. 30:83-89
15. Evans, C., S. D. Archer, S. Jacquet and W. H. Wilson. 2003. Direct estimates of the contribution of viral lysis and microzooplankton grazing to the decline of a Micromonas spp. population. Aquat. Microb. Ecol. 30:207-219
16. Jacquet, S. and G. Bratbak. 2003. Effects of ultraviolet radiation on marine virus-phytoplankton interactions. FEMS Microb. Ecol. 1511:1-11
17. Briand, J.-F., S. Jacquet, C. Bernard and J.-F. Humbert. 2003. Health hazards for terrestrial vertebrates from toxic cyanobacteria in surface water ecosystems. Review article. Vet. Res. 34:361-378
18. Muller, F., S. Jacquet and W. H. Wilson. 2003. Biological factors regulating the chemical speciation of Cu, Zn, and Mn under different nutrient regimes in a marine mesocosm experiment. Limnol. Oceanogr. 48: 2289-2302
19. Larsen, A., G. A. F. Flaten, R. A. Sandaa, T. Castberg, R. Thyrhaug, S. R. Erga, S. Jacquet and G. Bratbak. 2004. Spring phytoplankton bloom dynamics in Norwegian coastal waters: Microbial community succession and diversity. Limnol. Oceanogr. 49:180-190
20. Engel, A., B. Delille, S. Jacquet, U. Riebesell, E. Rochelle-Newall, A. Terbrüggen and I. Zondervan. 2004. TEP and DOC production by Emiliana huxleyi exposed to different CO2 concentrations: A mesocosm experiment. Aquat. Microb. Ecol. 34:1-13
21. Dorigo, U., S. Jacquet and J.-F. Humbert. 2004. Cyanophage diversity, inferred from g20 gene analyses, in the largest natural lake in France, Lake Bourget. Appl. Environ. Microbiol. 70: 1017-1022
22. Rochelle-Newall, E., B. Delillie, M. Frankignoulle, J.-P. Gattuso, S. Jacquet, U. Riebesell, A. Terbruggen and I. Zondervan. 2004. Chromophoric dissolved organic matter in experimental mesocosms maintained under different pCO2 levels. Mar. Ecol. Progr. Ser. 272:25-31
23. Havskum, H., L. Schlüter, R. Scharek, E. Berdalet and S. Jacquet. 2004. Routine quantification of phytoplankton groups : microscopy or pigment analyses. Mar. Ecol. Progr. Ser. 273:31-42
24. Jacquet, S., I. Domaizon, S. Personnic, S. Duhamel, M. Heldal, A. S. Pradeep Ram and T. Sime-Ngando. 2005. Estimates of protozoan and virus-mediated mortality of bacterioplankton in Lake Bourget (France). Fresh. Biol. 50:627-645
25. Jacquet, S., J.-F. Briand, C. Leboulanger, C. Avois-Jacquet, L. Oberhaus, B. Tassin, B. Vinçon-Leite, G. Paolini, J.-C. Druart, O. Anneville and J.-F. Humbert. 2005. The proliferation of the toxic cyanobacterium Planktothrix rubescens following restoration of the largest natural French lake (Lac du Bourget). Harmful Algae 4:651-672
26. Delille, B., J. Harlay, I. Zondervan,S. Jacquet, L. Chou, R. Wollast, M. Frankignoulle, A. Vieria Borges, U. Riebesell and J.-P. Gattuso. 2005. Response of primary production and calcification to changes of pCO2 during experimental blooms of the coccolithophorid Emiliana huxleyi. Global Biogeochemical Cycles 19 (2023):1-14
27. Engel, A., I. Zondervan, K. Aerts, A. Benthien, L. Chou, B. Delille, J.-P. Gattuso, J. Harlay, C. Heemann, L. Hoffmann, S. Jacquet, J. Nejstraard, M.-D. Pizay, E. Rochelle-Newall, U. Schneider; A. Terbrueggen and U. Riebesell. 2005. Testing the direct effect of CO2 conentration on a bloom of the coccolithophorid Emiliana huxleyi in mesocosm experiments. Limnol. Oceanogr. 50:493-507
28. Briand, J.-F., S. Jacquet, C. Flinois, C. Avois-Jacquet, C. Maisonnette, B. Leberre, and J.-F. Humbert. 2005. Variations in the microcystins production of Planktothrix rubescens (cyanobacteria) assessed by a four-years in situ survey of Lac du Bourget (France) and by laboratory experiments. Micro. Ecol. 50:418-428
29. Jardillier, L., D. Boucher, S. Personnic, S. Jacquet, A. Thénot, D. Sargos, C. Amblard and D. Debroas. 2005. Relative importance of nutrients and mortality factors on prokaryortic community composition in two lakes of different trophic status: microcosm experiments. FEMS Microb. Ecol. 53:429-443
30. Duhamel, S. and S. Jacquet. 2006. Flow cytometric analysis of bacteria and virus-like particles in lakes. J. Microbiol. Methods 64:316-322
31. Duhamel, S., I. Domaizon, S. Personnic and S. Jacquet. 2006. Assessing the microbial community dynamics and the role of bacteriophages as mortality agents in Lake Geneva. J. Water Sci. 19:115-126
32. Comte, J, S. Jacquet, S. Viboud, D. Fontvieille, G. Paolini and I. Domaizon. 2006. Microbial community structure and dynamics in the largest natural French lake (Lake Bourget, February to July 2002). Microb. Ecol. 52:72-89
33. Thingstad, T. F., H Havskum, U. L. Zweifel, E. Berdalet, M. Montserrat Sala, F. Peters, M. Alcaraz, R. Scharek, M. Perez, S. Jacquet, G. A. Fonnes Flaten, J. R. Dolan, C. Marrasé, F. Rassoulzadegan, A. Hagstrøm and D. Vaulot. 2007. Ability of a "minimum" microbial food web model to reproduce response patterns observed in mesocosms manipulated with N and P, glucose, and Si. J. Mar. Syst. 64:15-34
34. Jacquet, S., I. Domaizon, S. Personnic and T. Sime-Ngando. Do small grazers influence viral-induced bacterial mortality in Lake Bourget ? Fund. Appl. Limnol. 170: 125-132
35. Oberhaus, L., J.-F. Briand, C. Leboulanger, S. Jacquet and J.-F. Humbert. 2007. Comparative effects of the quality and quantity of light and temperature on the growth of Planktothrix agardhii and P. rubescens. J. Phycol. 43:1191-1199
36. Danovaro, R., C. Corinaldesi, M. Filippini, U. Fischer, M. O. Gessner, S. Jacquet, M. Magagnini and B. Velimirov. 2008. Viriobenthos in fresh water and marine sediments: a review. Fresh. Biol. 53:1186-1213
37. Sime-Ngando, T., J. Colombet, S. Personnic, I. Domaizon, U. Dorigo, P. Perney, J.-C Hustache, E. Viollier and S. Jacquet. 2008. Short-term variations in abundances and potential activities of viruses, bacteria and nanoprotists in Lake Bourget (France). Ecol. Res. 23:851-861
38. Middelboe, M., S. Jacquet and M. Weinbauer. 2008. Viruses in freshwater ecosystems: an introduction to the exploration of viruses in new aquatic habitats. Fresh. Biol. 53:1069-1075
39. Miki, T. and S. Jacquet.2008. REVIEW. Complex interactions in the microbial world: under-explored key links between viruses, bacteria and protozoan grazers in aquatic environments. Aquat. Microb. Ecol. 51:195-208
40. Jacquet, S..2009. Obituary: Bernard Dussart (1922-2008). J. Plank. Res. 31:345-348
41. Cellamare, M., A. Rolland and S. Jacquet. 2009. Flow cytometry sorting of freshwater phytoplankton. J. Appl. Phycol. 22:87-100.
42. Personnic, S., I. Domaizon, U. Dorigo, L. Berdjeb and S. Jacquet. 2009. Seasonal and spatial variability of virio-, bacterio- and picophytoplankton in three peri-alpine lakes. Hydrobiol. 627:99-116
43. Personnic, S., I. Domaizon, T. Sime-Ngando and S. Jacquet. 2009. Seasonal variations of microbial abundances and virus- versus flagellate-induced mortality of picoplankton in three peri-alpine lakes. J. Plank. Res. 31:1161-1177.
44. Rolland, A., M. Maury, F. Bertrand and S. Jacquet. 2009. Assessing phytoplankton structure and seasonal dyanmics in a freshwater ecosystem using a new and powerful multitable statistical analysis. Wat. Res. 43:3155-3168
45. Berdjeb, L. et S. Jacquet. 2009. La viriosphère : quelle place dans le fonctionnement et l'évolution des écosystèmes aquatiques. Partie 1 ?Virologie 13:133-143.
46. Berdjeb, L. et S. Jacquet. 2009. La viriosphère : quelle place dans le fonctionnement et l'évolution des écosystèmes aquatiques. Partie 2 ?Virologie 13:189-199
47. Jacquet, S., T. Miki, R. Noble, P. Peduzzi and S. Wilhelm. 2010. Viruses in aquatic ecosystems: important advancements of the last 20 years and prospects for the future in microbial oceanography and limnology. Adv. Oceanogr. Limnol. 1:71-101
48. Bryhn, A.C., C. Girel, G. Paolini and S. Jacquet. 2010. Reconstructing historical phosphorus loadings and predicting future effects from nutrient abatment and climate change on phosphorus concentrations in the largest natural French lake (Lake Bourget). Ecol. Model. 221:1440-1450
49. Jacquet, S., P. Nival, L. Prieur and D. Vaulot. 2010. Structure and variability of the microbial community associated to the Alboran Sea from system (Western Mediterranean) in winter. J. Oceanogr. Res. Dev. 3:47-75
50. Miki, T. and S. Jacquet. 2010. Indirect interactions in the microbial world: specificities and similarities to plant-insect systems. Pop. Ecol. 52:475-483
51. Rolland, A., F. Rimet and S. Jacquet. 2010. A 2-year phytoplanktonic survey in the Reservoir Marne (France): a case study validating the use of a spectrofluorometer by comparison to algal taxonomy and chlorophyll a measurements. Know. Monitor. Aquat. Ecosyst. 398:1-19
52. Roland, A. et S. Jacquet. 2010. Classification de l'état écologique du réservoir Marne via l'utilisation de 3 métriques: chlorophylle a, Indice planctonique lacustre et Phosphore total. Hydroecol. Appl. 17:1-12
53. Thomas, R., L. Berdjeb, T. Sime-Ngando and S. Jacquet. 2011. Viral abundance, production, decay rates and life strategies (lytic vs. lysogenic) in Lake Bourget. Environ. Microbiol. 13:616-630
54. Berdjeb, L., J.F. Ghiglione, I. Domaizon and S. Jacquet. 2011. A 2-year assessment of the main environmental factors driving the free-living bacterial community structure in Lake Bourget (France). Microb. Ecol. 61:941-954
55. Berdjeb, L., J.F. Ghiglione and S. Jacquet. 2011. Bottom-up vs. top-down control of hypo- and epilimnion free-living bacterial community stuctures in two neighboring freshwater lakes. Appl. Environ. Microbiol. 77:3591-3599
56. Bettarel, Y., T. Bouvier, C. Bouvier, C. Carré, A. Desnues, I. Domaizon, S. Jacquet, A. Robin and T. Sime-Ngando. 2011. Ecological traits of tropical planktonic viruses an,d prokaryotes along a full salinity gradient. FEMS Microb. Ecol. 76: 360-372
57. Bouvy, M., Y. Bettarel, C. Bouvier, I. Domaizon, S. Jacquet, E. LeFloc'h, H. Montanié, B. Mostajir, T. Sime-Ngando, J.P. Torréton, F. Vidussi and T. Bouvier. 2011. Trophic interactions between viruses, bacteria and nanoflagellates under various nutrient conditions and simulated climate change. Environ. Microbiol. 13:1842-1857
58. Berdjeb, L., I. Domaizon and S. Jacquet. 2011. Effect of grazers and viruses on bacterial community structure and production in two contrasting trophic lakes. BMC Microbiol. 11:88
59. Bratbak, G., S. Jacquet, A. Larsen, L. Petterson, A. F. Sazhin and R. Thyrhaug. The plankton community in Norwegian coastal waters - abundance, composition, spatial distribution and diel variation. Cont. Shelf Res. 31:1500-1514
60. Buitenhuis, E.T. and 14 co-authors. 2012. Picophytoplankton biomass distribution in the global ocean. Earth Syst. Sci. Data 5:221-242
61. Buitenhuis, E.T. and 14 co-authors. 2012. Bacterial biomass distribution in the global ocean. Earth Syst. Sci. Data 5:301-315
62. Thomas, R., S. Jacquet, N. Grimsley and H. Moreau. 2012. Strategies and mechanisms of viral resistance in photosynthetic microorganims. Adv. Oceanogr. Limnol. 3:1-15
63. Grimsley, N., R. Thomas, J. U. Kegel, S. Jacquet, H. Moreau and Y. Desdevises. 2012. Genomics of algal host-virus interactions. Adv. Bot. Res. 64:343-382
64. Jacquet, S., X. Zhong, A. Parvathi and A.S. Pradeep-Ram. 2012. First description of a cyanophage infecting the cyanobacterium Arthrospira platensis (Spirulina). J. Appl. Phycol. 25:195-203
65. Domaizon, I., C. Lepère, D. Debroas, S. Jacquet, J.F Ghiglione, H. Montanié, M. Bouvy, Y. Bettarel, B. Mostajir and T. Bouvier. 2012. Structuring effects of UV radiations, temperature and nutrient increases on the diversity of small eukaryotes in a Mediterranean coastal lagoon. BMC Microbiol. 12:202
66. Parvathi, A., X. Zhong and S. Jacquet. 2012. Dynamics of various viral groups infecting autotrophic plankton in Lake Geneva. Adv. Oceanogr. Limnol. 3:171-191
67. Jacquet, S., O. Anneville et I. Domaizon. 2012. Evolution de paramètres clefs indicateurs de la qualité des eaux et du fonctionnement écologique des grands lacs péri-alpins (Léman, Bourget, Annecy): Etude comparative de trajectoires de restauration post-eutrophisation. Arch. Sci. 65:225-242
68. Montuelle, B., O. Anneville, A. Champigneulle, I. Domaizon, J. M. Dorioz, J. Guillard, S. Jacquet and M. E. Perga. 2012. Réponses de la biodiversité lacustre au changement global : variabilité à petite échelle et tendances à long terme. Inn. Agro. 23:3-18
69. Zemb, O., M. Manfield, F. Thomas and S. Jacquet. 2013. Phage adsorption to bacteria in the light of the electrostatics: A case study using E. coli, T2 and flow cytometry. J. Virol. Methods 189:283-289
70. Jacquet, S., I. Domaizon, C. Chardon and S. Personnic. 2013. Are small grazers and/or viruses a structuring factor of the free-living bacterial community in Lake Geneva? Adv. Microbiol. 3:233-248
71. Birck et al. 2013. Sentinel lakes: A network for the study and management of moutain lakes in the French Alps and Corsica. Eco. Mount. 5:61-68
72. Berdjeb, L., T. Pollet, C. Chardon and S. Jacquet. 2013. Spatio-temporal changes in the structure of archaeal communities in two deep freshwater lakes. FEMS Microb. Ecol. 86:215-230
73. Jacquet, S., U. Dorigo and S. Personnic. 2013. A few tests prior to flow cytometry and epifluorescence analyses of freshwater bacterio- and virioplankton communities. Chapter book 1 in Nova Publishers
74. Zhong, X., L. Berdjeb and S. Jacquet. 2013. Temporal dynamics and structure of picocyanobacteria and cyanomyoviruses in Lakes Annecy and Bourget. FEMS Microb. Ecol. 86:312-326
75. Zhong, X. and S. Jacquet. 2013. Prevalence of viral photosynthetic and capsid protein genes from cyanophages in two large and deep peri-alpine lakes. Appl. Environ. Microbiol. 79:7169-7178
76. Anneville, A., M. Beniston, N. Gallina, C. Gillet, S. Jacquet, J. Lazzarotto et M. Perroud. 2013. L'empreinte du changement climatique dans le Léman. Arch. Sci. 66:157-172
77. Zhong, X., A.S. Pradeep Ram, J. Colombet and S. Jacquet. 2014. Variations in abundance, genome size, morphology and functional role of the virioplankton in Lakes Annecy and Bourget over a 1-year period. Microb. Ecol. 67:66-82
78. Zhong, X. and S. Jacquet. 2014. Contrasting diversity of phycodnavirus signature genes in two and deep large western European lakes. Environ. Microbiol. 16:759-773
79. Jacquet, S., I. Domaizon and O. Anneville. 2014. The need for ecological monitoring of freshwaters in a changing world: A case studies of Lakes Annecy, Bourget and Geneva. Environ. Monitor. Assess. 186:3455-3476
80. Zhong, X., F. Rimet and S. Jacquet. 2014. Seasonal variations in PCR-DGGE fingerprinted viruses infecting phytoplankton in large and deep peri-alpine lakes. Ecol. Res. 29:271-287
81. Parvathi, A., X. Zhong, A.S. Pradeep Ram and S. Jacquet. 2014. Dynamics of auto- and heterotrophic picoplankton and associated viruses in Lake Geneva. Hydrol. Earth Syst. Sci. 18:1073-1087
82. Zhong, X. and S. Jacquet. Differing assemblage composition and dynamics in T4-like myophages of two neighbouring sub-alpine lakes. Fresh. Biol. 59:1577-1595
83. Jacquet, S., O. Kerimoglu, F. Rimet, G. Paolini and O. Anneville. 2014. Cyanobacterial bloom termination: the disappearance of Planktothrix rubescens from Lake Bourget after restoration. Fresh. Biol. 59:2472-2489
84. Jacquet, S. et K.J. Parikka. 2014. VOM3: Virus de microbes, structures et fonctions, de la molécule à l'échelle des communautés. Virologie 18:297-300
85. Jacquet, S. 2014. Cyanobacterial harmful algal bloom: Legends of the fall ... die hard! An Answer in Science 346 (October 2014)
86. Ben Rhomdame, S., M. el Bour, A. Hamza, F. Akrout, M. Mejdeddine Kraiem and S. Jacquet. 2014. Seasonal patterns of viral, microbial and planktonic communities in Sidi Salem: a freshwater reservoir (North of Tunisia). Int. J. Limnol. 50:299-314
87. Anneville, O., I. Domaizon, O. Kerimoglu, F. Rimet and S. Jacquet. 2015. Blue-greens in a greenhouse century? New insights from field data of climate changes on cyanobacterial abundnances. Ecosystems 18:441-458
88. Zhong, X., B. Guidoni, L. Jacas and S. Jacquet. 2015. Structure and diversity of ssDNA Microviridae viruses in two peri-alpine lakes (Annecy and Bourget, France). Research in Microbiology 166:644-654
89. Fontvieille, J., S. Reynaud, S. Jacquet, B. LeBerre and C. Ferrier-Pages. 2015. First evidence of an important organic matter trophy pathway between temperate corals and pelagic microbial communities. Plos One 10(10): e0139175
90. Meunier, A. and S. Jacquet. 2015. Do phages impact microbial dynamics, prokaryotic community structure and nutrient dynamics in Lake Bourget? Biology Open doi:10.1242/bio.013003
91. Jacquet, S. 2016. Obituary: Gérard Balvay (1944-2015). International Journal of Limnology 52:33-34
92. Parikka, K.J., M. LeRomancer, N. Wauters and S. Jacquet. 2017. Deciphering the virus-to-prokaryote ratio (VPR) : Insights into virus-host relationships in a variety of ecosystems. Biological Reviews 92:1081-1100
93. Gallina, N., M. Beniston and S. Jacquet. 2017. Estimating future cyanobacterial occurrence and importance in lakes: A case study with P. rubescens in Lake Geneva. Aquatic Sciences 79:249-263
94. Jurkevitch, E. et S. Jacquet. 2017. Bdellovibrio et organismes apparentés: des prédateurs bactériens hors du commun! Médecine/Sciences 33
95. Blottière, L., M. Jaffar-Bandjee, S. Jacquet, A. Millot and F. Hulot. 2017. Effect of mixing on the pelagic food web in shallow lakes. Freshwater Biology 62:161-177
96. Démory, D., L. Arsenieff, N. Simon, C. Six, F. Rigault-Jalabert, D. Marie, P. Ge, E. Bigeard, S. Jacquet, A. Sciandra, O. Bernard, S. Rabouille and A.-C. Baudoux. 2017. Temperature is a key factor in Micromonas-virus interactions. The Isme Journal 11:601-612
97. Courtial, L., C. Ferrier-Pages, S. Jacquet, R. Rodolfo Metalpa, S. Reynaud, C. Rottier and F. Houlbrèque. 2017. Temperature and UV effects on the organic matter fluxes and metabolic activity of Acropora muricata. Biology Open 6:1190-1199
98. Kerimoglu, O., S. Jacquet, B. Vinçon-Leite, B. Lemaire, F. Rimet, F. Soulignac, D. Trévisan and O. Anneville. 2017. Modeling the plankton groups of the deep peri alpine Lake Bourget. Ecological Modeling 359:415-433
99. Leach, T. and co-authors. 2017. Patterns and drivers of deep chlorophyll maxima structure in 100 lakes: the relative importance of light and thermal stratification. Limnology & Oceanography 63:628-646
100. Rivera Rocabado, S., V. Vasselon, S. Jacquet, A. Bouchez, D. Ariztegui and F. Rimet. 2018. Metabarcoding of lake benthic diatoms: from structure assemblages to ecological assessment. Hydrobiologia 807:37-51
101. Pollet, T., L. Berdjeb, C. Chardon and S. Jacquet. 2018. Dynamics of ammonia oxidizing archaeal communities and distribution of AOA gene in two contrasting lakes. Aquatic Microbial Ecology 81:95-108
102. Parikka, K.J., S. Jacquet and M. LeRomancer. 2018. Abundances of the thermophilic viral communities of the hot springs of the French Southern and Antarctic lands. Polar Biology 41:1335-1352
103. Vasselon, V., A. Bouchez, F. Rimet, S. Jacquet, R. Trobajo, M. Corniquel, K. Tapolczai and I. Domaizon. 2018. Avoiding quantification bias in metabarcoding : Application of a cell biovolume correction factor in diatom molecular biomonitoring. Methods in Ecology & Evolution 9:1060-1069
104. Lefrançois, E et al. 2018. Development and implementation of eco-genomic tools for aquatic ecosystem biomonitoring: The SYNAQUA French Swiss Program. Environmental Science and Pollution Research 25:33858-33866
105. Zhong, X., C. Suttle, E. Derelle, Y. Desdevises, A.-C. Baudoux, J. Colombet, C. Six and S. Jacquet. 2018. A new freshwater cyanosiphovirus harbouring integrase. Frontiers in Microbiology 9 article 2204
106. van der Water, JAJM, L. Courtial, F. Houlbrèque, S. Jacquet and C. Ferrier-Pages. 2018. UVR has a limited impact on seasonal diffrences in Acropora muricata holobiont. Frontiers in Marine Science 5 article 275
107. Ezzedine, J. et S. Jacquet. 2019. Bactéries prédatrices: zoom sur les Bdellovibrio et organismes apparentés (BALOs). Notes Académiques de l'Académie d'Agriculture de France 2:1-25.
108. Paix, B., J. Ezzedine and S. Jacquet. Diversity, dynamics and distribution of Bdellovibrio and like organisms in peri-alpine lakes. Applied and Environmental Microbiology 85:e02494-18
109. Weyhenmeyer et al. 2019. Widespread diminishing anthropogenic effects on calcium in freshwaters. Scientific report 9: e10450 (2019)
110. Ezzedine, J., L. Jacas, Y. Desdevises and S. Jacquet. 2020. Bdellovibrio and like organisms in Lake Geneva : An unseen elephant in the room? Frontiers in Microbiology 11 Article 98
111. Ezzedine, J., G. Pavard, M. Gardillon and S. Jacquet. 2020. Bdellovibrio sp: An important bacterial predator in Lake Geneva ? Journal of Microbiology and Biotechnology
112. Rimet et al. 2020. The Observatory on LAkes (OLA) database : Sixty years of environmental data accessible to the public. J. Limnol. 79(2): 164-178
113. Jenny, J-P. et al. 2020. Scientist's warning to humanity: Rapid degradation of the world's large lakes. J. Great Lake Res. DOI 10. 1016/j.jglr.2010.05.006
114. Ezzedine, J., C. Chardon and S. Jacquet. 2020. New 16S rRNA primers to uncover Bdellovibrio and like organisms diversity and abundance. J. Microb. Methods 175: 105996
115. Ezzedine, J., Y. Desdevises and S. Jacquet. Exploring archaeal and bacterial diversity and interactions in Lake Geneva. Adv. Oceanogr. Limnol. 11, 2
116. Tran-Kahc, V et al. 2020. In situ pelagic dataset from continuous monitoring: a mescosm experiment in Lake Geneva (MESOLAC). Data in Brief 3, 106255
117. Derot, J., H. Yajima and S. Jacquet. 2020. Advances in forecasting harmful algal blooms using machine learning models: A case study with Planktothrix rubescens in Lake Gevena. Harmful Algae 99, 101906
118. Blanco-Ameijeiras, S. et al. 2020. Exopolymeric substances control microbial community structure and function by contributing to both C and Fe nutrition in Fe-limited southern ocean provinces. Microorganisms 8, 1980

Articles acceptés, en révision ou soumis en 2021 - Articles accepted, in revision or submitted in 2021

• Ezzedine, J., A. Janicot, S. Rasconi, I. Domaizon and S. Jacquet. Short-term dynamics of Bdellovibrio and like organisms in Lake Geneva in response to a simulated climatic extreme event.
• Ezzedine, J., M. Scheifler, Y. Desdevises and S. Jacquet. Exploring the diversity, abundance and structure of Bdellovibrio and like organisms in four contrasted ecosystems.
• Doubek et al. The extent and variability of storm-induced temperature changes in lakes worldwide using long-term and high frequency data.
• Lyautey, E., E. Billard, N. Tissot, S. Jacquet and I. Domaizon. Seasonal dynamics of abundance, structure and diversity of methanogens and methanotrophs in lake sediments. Microbial Ecology
• Moiron, M., C. Girel, F. Rimet and S. Jacquet. Die hard in Lake Bourget! The case of Planktothrix rubescens. PCI Ecology
• Tran-Kach et al. Physico-chemical dataset from an in situ mesocosm experiment simulating extreme climate events in Lake Geneva (MESOLAC).

Prévus en 2021 - Forthcoming in 2021

• Chiapusio, G., I. Domaizon, F. Arthaud and S. Jacquet. Allelopathic effects on different freshwater phytoplankters and macrophytes.
• Jacquet, S. Picocyanobacterial dynamics and diversity in peri-alpine lakes
• Jacquet, S. and F. Rimet. Restoration of the largest natural lake in France ( Lake Bourget) assessed through PE-rich phytoplankton groups.
• Grandrémy, N., V. Frossard, J. Guillard, F. Arthaud and S. Jacquet. Evidence of ecological shifts in fresh water ecosystems: A case study in Lake Bourget.
• Ezzedine, J., Y. Desdevises and S. Jacquet. Bdellovibrio and like organisms: knowledge and gaps of the smallest cellular hunters of the microbial world.
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  Divers (vulgarisation, prix, intervention, rapports scientifiques, chapitres d'ouvrage)

  1. Prix de l'Union des Océanographes de France décerné à Stéphan Jacquet, mars 1999, Marseille
  2. Prix Bretagne jeune chercheur 2001, mention spéciale décerné à Stéphan Jacquet, décembre 2001, Brest
  3. Jacquet, S. 2001. Virus aquatiques: des tueurs très utiles. Biofutur 213:57-61
  4. La Recherche 2002. Picophage: le plus petit prédateur connu. La Recherche 349:20-21
  5. Sciences Ouest 2002. Le picophage, un maillon clé dans le cycle du CO2. Sciences ouest 186:10
  6. Duhamel, S., S. Personnic et S. Jacquet. 2004. Importance des virus en milieu lacustre. INRA mensuel 122:8-9
  7. Le Point. 2005. Les docteurs du lac. Spécial "Thonon-les-Bains". Le Point n° 1687
  8. Personnic, S., S. Duhamel, Y. Bettarel, T. Sime-Ngando et S. Jacquet. 2006. Les virus planctoniques: un compartiment biologique clé des écosystèmes aquatiques. Le Courrier de l'Environnement de l'INRA 53:19-34
  9. Jacquet, S. et al. 2007. Suivi de la qualité des eaux du lac du Bourget pour l'année 2006. Rapport INRA-CISALB, 132 p.
  10. Le Dauphine libéré. 2007. Prolifération d'une cyanobactérie au Léman. Article soumis. Article publié dans la presse.
  11. Personnic, S. and S. Jacquet. 2007. Les virus : chefs d'orchestre aquatiques. La Recherche 407:50-53
  12. Jacquet, S. et S. Personnic. 2007. Les virus : chefs d'orchestre aquatiques. Les Dossiers de la Recherche 28:29-33
  13. Jacquet, S. 2007. A propos de la corne du narval. Géo n°343 p6
  14. Radio Suisse Romande. 2007. Emission "Impatience" sur les virus (mercredi 26 sept 2007). Interview (Podcast si il est encore disponible !)
  15. Jacquet, S. 2008. Portrait d'un limnologue : Bernard Dussart (1922-...). Mémoires et Documents publiés par l' Académie Chablaisienne, pp 99-134
  16. Jacquet, S. et al. 2008. Suivi de la qualité des eaux du lac du Bourget pour l'année 2007. Rapport INRA-CISALB, 162 p.
  17. Jacquet, S. et al. 2009. Suivi de la qualité des eaux du lac du Bourget pour l'année 2008. Rapport INRA-CISALB, 204 p.
  18. Jacquet, S. et al. 2010. Suivi de la qualité des eaux du lac du Bourget pour l'année 2009. Rapport INRA-CISALB, 186 p.
  19. Jacquet, S. et al. 2011. Suivi de la qualité des eaux du lac du Bourget pour l'année 2010. Rapport INRA-CISALB,187 p.
  20. Jacquet, S., I. Domaizon, S. Masquelier, C. Lepère, L. Guillou, A. Chambouvet, D. Debroas et T. Sime-Ngando. 2011. Virus, bactéries et protistes pathgènes du phytoplancton: Le rôle insoupçonné des parasites dans le fonctionnement des écosystèmes aquatiques. Le Courrier de l'Environnement de l'INRA 60:33-46
  21. Balvay, G., J.C Druart, S. Jacquet. 2012. Le lac du Bourget: ses eaux et sa biologie. Ouvrage paru aux Editions Quae, 152 p.
  22. Jacquet, S.. 2012. Portrait d'un limnologue: Gérard Balvay (1941-...). Mémoires et Documents publiés par l' Académie Chablaisienne Tome LXXII, pp 309-354
  23. Jacquet, S. et C. Depecker. 2012. La diversité des virus aquatiques. Pour la Science 415 (mai 2012)
  24. Jacquet, S.. 2012. Portrait d'un limnologue: Jean-Claude Druart (1943 -...).
  25. Jacquet, S.. 2012. Portrait hommage d'un limnologue: Philippe Olive (1935 - 2012) non publié à la demande de la famille (document interne à la SHL)
  26. Jacquet, S. et al. 2012. Suivi environnemental et de la qualité des eaux du lac du Bourget pour l'année 2011. Rapport INRA-CISALB,223 p.
  27. Jacquet, S. 2012 L'histoire de la Station INRA d'Hydrobiologie Lacustre de Thonon-les-Bains. Mémoire de 149 p.
  28. Interview pour le Figaro, mars 2013, en lien avec la découverte d'un nouveau virus océanique
  29. Jacquet, S. et al. 2013. Suivi environnemental et de la qualité des eaux du lac du Bourget pour l'année 2012. Rapport INRA-CISALB,224 p
  30. Jacquet, S. 2013. Les virus aquatiques. Chapitre dans l'ouvrage "Panorama de la virologie" aux Edition Belin (Editeur A. Saib)
  31. Jacquet, S. et al. 2014. Suivi environnemental et de la qualité des eaux du lac du Bourget pour l'année 2013. Rapport INRA-CISALB,201 p
  32. Jacquet, S., F. Rimet and J.C. Druart. 2014. Composition and dynamics of phytoplanktonic communities in 3 large and deep western European lakes: an outline of the evolution from 2004 to 2012. Chapter 5 in book 2 of Nova Publishers, pp 131-149
  33. Jacquet, S. 2014. La limnologie et l'histoire de la Station d'Hydrobiologie Lacustre de Thonon-les-Bains: des hommes dans l'histoire. Mémoire et Documents de l'Académie chablaisienne n°73 (ISSN 1157-0652)
  34. Jacquet, S. 2014. Portrait d'un limnologue: Jean-Claude Druart. Mémoire et Documents de l'Académie chablaisienne n°73 (ISSN 1157-0652)
  35. Jacquet, S. 2014. Les couleurs du lac du Bourget: Un régal pour le peintre, une alerte pour le biologiste. Nature et Patrimoine en Pays de Savoie 44:9-13 (novembre 2014)
  36. Jacquet, S. et al. 2015. Biologie et écologie, des grands lacs naturels alpins. Chapitre dans "Le tour des grands lacs alpins naturels en 80 questions"
  37. Jacquet, S. et al. 2015. Suivi environnemental et de la qualité des eaux du lac du Bourget pour l'année 2014. Rapport INRA-CISALB,196 p
  38. Jacquet, S. et al. 2016. Les microorganismes du Léman, des eaux de surface aux grandes profondeurs. Chapitre Microbiologie dans "dans les abysses du Léman", ouvrage édité par Ulrich Lemmin, Presses Universitaires Suisses
  39. Personnels INRA Thonon. 2016. 70 ans de connaissances scientifiques en limnologie. Livrets & Posters
  40. Jacquet, S. et al. 2016. Suivi environnemental et de la qualité des eaux du lac du Bourget pour l'année 2015. Rapport INRA-CISALB,196 p
  41. Jacquet, S. et al. 2017. Suivi environnemental et de la qualité des eaux du lac du Bourget pour l'année 2016. Rapport INRA-CISALB,211 p
  42. Jacquet, S. et al. 2018. Suivi environnemental et de la qualité des eaux du lac du Bourget pour l'année 2017. Rapport INRA-CISALB,245 p
  43. Jacquet, S. 2018. La plongée subaquatique au service de la connaissance. Nature & Patrimoine en pays de Savoie n°56
  44. Jacquet, S. 2018. Des sacs dans le Léman. Nature & Patrimoine en Pays de Savoie n°56
  45. Jacquet, S. et al. 2018. Virus interactions in the aquatic world. In Viruses of microorganisms (book edited by Caister Academic Press, Paul Hyman & Stephen Abedon)
  46. Jacquet, S. et al. 2018. Methods and technologies to assess viral interactions in the aquatic world. In Viruses of microorganisms (book edited by Caister Academic Press, Paul Hyman & Stephen Abedon)
  47. Jacquet, S. et al. 2019. Généalogie et limnologie. Rameaux n°85 (mars 2019)
  48. Jacquet, S. et al. 2019. Suivi environnemental et de la qualité des eaux du lac du Bourget pour l'année 2018. Rapport INRA-CISALB,215 p
  49. Ezzedine, J.A. et S. Jacquet. 2019. Bactéries prédatrices: zoom sur les Bdellovibrio et organismes apparentés (BALOs) Notes académiques de l'académie d'agriculture 2:1-25 + supplements
  50. Jacquet, S. 2019. Des lacs sous surveillance.Nature et Patrimoine des Pays de Savoie (printemps 2019)
  51. Jacquet, S. et C. Depecker. 2019. Les virus, piliers de la vie marine. Pour la Science Hors série n°104:37-43
  52. Jacquet, S. et J. Ezzedine. 2019. Ces bactéries qui en dévorent d'autres. Pour la Science n°504:62-71
  53. Jacquet, S. et al. 2020. Suivi écologique du lac du Bourget pour l'année 2019. Rapport INRA-CISALB,186 p
  54. Jacquet, S. et al. 2021. Suivi écologique du lac du Bourget pour l'année 2020. Rapport INRA-CISALB,186 p
  55. Jacquet, S. 2020. Les surprises du Léman, vues de l'intérieur. Nature & Patrimoine en Pays de Savoie n° 57 pp 16-20
  56. Peb & Fox. 2021. Les BALOs en bande dessinée (scénario original de Jade Ezzedine & Stéphan Jacquet).
      
      
      
      
      Les articles ayant trait à la plongée sous-marine (et au delà, tout ce qui concerne l'activité) sont consultables en cliquant ici.
      
      
      

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      Cette page a été actualisée au mois de février 2021 - Last update on February 2021