PUBLICATIONS SCIENTIFIQUES - SCIENTIFIC PUBLICATIONS
de 1997 à aujourd'hui ... - From 1997 to now...
Un CV en français est consultable pour en savoir un peu plus sur mon parcours. A CV in english is available by simple click.Articles publiés ou sous presse ou acceptés - Articles published or in press or accepted- Marie, D., F. Partensky, S. Jacquet and D. Vaulot. 1997. Enumeration and cell cycle analysis of natural populations of marine picoplankton by flow cytometry using the nucleic acid strain SYBR Green I. Appl. Environ. Microbiol. 63:186-193
- Jacquet, S., J.-F. Lennon and D. Vaulot. 1998. Application of a compact automatic sea water sampler to high frequency picoplankton studies. Aquat. Microb. Ecol. 14:309-314
- Jacquet, S., J.-F. Lennon, D. Marie and D. Vaulot. 1998. Picoplankton population dynamics in coastal waters of the NW Mediterranean Sea. Limnol. Oceanogr. 43:1916-1931
- Christaki, U., S. Jacquet, J. R. Dolan, D. Vaulot and F. Rassoulzadegan. 1999. Growth and grazing on Prochlorococcus and Synechococcus by two marine flagellates. Limnol. Oceanogr. 44:52-62
- Jacquet, S. and J.-F. Lennon. 1999. Dynamique haute fréquence des populations picoplanctoniques marines. J. Rech. Océanogr. 24:77-86
- Holtzendorff, J., F. Partensky, S. Jacquet, F. Bruyant, D. Marie, L. Garczarek, I. Mary, D. Vaulot and W. R. Hess. 2001. Diel expression of cell cycle-related genes in synchronized cultures of Prochlorococcus sp. strain PCC 9511. J. Bact. 183:915-920
- Jacquet, S., F. Partensky, D. Marie, R. Casotti and D. Vaulot. 2001. Cell cycle regulation by light in Prochlorococcus strains. Appl. Environ. Microbiol. 67:782-790
- Jacquet, S., F. Partensky, J.-F. Lennon and D. Vaulot. 2001. Diel patterns of growth and division in marine picoplankton in culture. J. Phycol. 37:357-369
- Guillou, L., S. Jacquet, M.-J. Chrétiennot-Dinet. 2001. Grazing impact of two small heterotrophic flagellates on Prochlorococcus and Synechococcus. Aquat. Microb. Ecol. 26:201-207
- Jacquet, S. 2001. La variabilité physiologique et numérique du picophytoplancton marin à petite échelle de temps. J. Rech. Oceanogr. 26:61-72
- Jacquet, S., H. Havskum, F. T. Thingstad and D. Vaulot. 2002. Effects of inorganic and organic nutrient enrichment on a coastal microbial community (Isefjord, Denmark). Mar. Ecol. Progr. Ser. 228:3-14
- Jacquet, S., M. Heldal, D. Iglesias-Rodriguez, A. Larsen, W. Wilson and G. Bratbak. 2002. Flow cytometric analysis of an Emiliana huxleyii bloom terminated by viral infection. Aquat. Microb. Ecol. 27:111-124
- Jacquet, S., L. Prieur, C. Avois-Jacquet, J.-F. Lennon and D. Vaulot. 2002. Short-timescale variability of picophytoplankton abundance and cellular parameters in surface waters of the Alboran Sea (western Mediterranean). J. Plank. Res. 24:639-655
- Leboulanger, C., U. Dorigo, S. Jacquet, B. LeBerre, G. Paolini and J.-F. Humbert. 2002. Application of a submersible spectrofluorometer for rapid monitoring of freshwater cyanobacterial blooms: a case study. Aquat. Microb. Ecol. 30:83-89
- Evans, C., S. D. Archer, S. Jacquet and W. H. Wilson. 2003. Direct estimates of the contribution of viral lysis and microzooplankton grazing to the decline of a Micromonas spp. population. Aquat. Microb. Ecol. 30:207-219
- Jacquet, S. and G. Bratbak. 2003. Effects of ultraviolet radiation on marine virus-phytoplankton interactions. FEMS Microb. Ecol. 1511:1-11
- Briand, J.-F., S. Jacquet, C. Bernard and J.-F. Humbert. 2003. Health hazards for terrestrial vertebrates from toxic cyanobacteria in surface water ecosystems. Review article. Vet. Res. 34:361-378
- Muller, F., S. Jacquet and W. H. Wilson. 2003. Biological factors regulating the chemical speciation of Cu, Zn, and Mn under different nutrient regimes in a marine mesocosm experiment. Limnol. Oceanogr. 48: 2289-2302
- Larsen, A., G. A. F. Flaten, R. A. Sandaa, T. Castberg, R. Thyrhaug, S. R. Erga, S. Jacquet and G. Bratbak. 2004. Spring phytoplankton bloom dynamics in Norwegian coastal waters: Microbial community succession and diversity. Limnol. Oceanogr. 49:180-190
- Engel, A., B. Delille, S. Jacquet, U. Riebesell, E. Rochelle-Newall, A. Terbrüggen and I. Zondervan. 2004. TEP and DOC production by Emiliana huxleyi exposed to different CO2 concentrations: A mesocosm experiment. Aquat. Microb. Ecol. 34:1-13
- Dorigo, U., S. Jacquet and J.-F. Humbert. 2004. Cyanophage diversity, inferred from g20 gene analyses, in the largest natural lake in France, Lake Bourget. Appl. Environ. Microbiol. 70: 1017-1022
- Rochelle-Newall, E., B. Delillie, M. Frankignoulle, J.-P. Gattuso, S. Jacquet, U. Riebesell, A. Terbruggen and I. Zondervan. 2004. Chromophoric dissolved organic matter in experimental mesocosms maintained under different pCO2 levels. Mar. Ecol. Progr. Ser. 272:25-31
- Havskum, H., L. Schlüter, R. Scharek, E. Berdalet and S. Jacquet. 2004. Routine quantification of phytoplankton groups : microscopy or pigment analyses. Mar. Ecol. Progr. Ser. 273:31-42
- Jacquet, S., I. Domaizon, S. Personnic, S. Duhamel, M. Heldal, A. S. Pradeep Ram and T. Sime-Ngando. 2005. Estimates of protozoan and virus-mediated mortality of bacterioplankton in Lake Bourget (France). Fresh. Biol. 50:627-645
- Jacquet, S., J.-F. Briand, C. Leboulanger, C. Avois-Jacquet, L. Oberhaus, B. Tassin, B. Vinçon-Leite, G. Paolini, J.-C. Druart, O. Anneville and J.-F. Humbert. 2005. The proliferation of the toxic cyanobacterium Planktothrix rubescens following restoration of the largest natural French lake (Lac du Bourget). Harmful Algae 4:651-672
- Delille, B., J. Harlay, I. Zondervan,S. Jacquet, L. Chou, R. Wollast, M. Frankignoulle, A. Vieria Borges, U. Riebesell and J.-P. Gattuso. 2005. Response of primary production and calcification to changes of pCO2 during experimental blooms of the coccolithophorid Emiliana huxleyi. Global Biogeochemical Cycles 19 (2023):1-14
- Engel, A., I. Zondervan, K. Aerts, A. Benthien, L. Chou, B. Delille, J.-P. Gattuso, J. Harlay, C. Heemann, L. Hoffmann, S. Jacquet, J. Nejstraard, M.-D. Pizay, E. Rochelle-Newall, U. Schneider; A. Terbrueggen and U. Riebesell. 2005. Testing the direct effect of CO2 conentration on a bloom of the coccolithophorid Emiliana huxleyi in mesocosm experiments. Limnol. Oceanogr. 50:493-507
- Briand, J.-F., S. Jacquet, C. Flinois, C. Avois-Jacquet, C. Maisonnette, B. Leberre, and J.-F. Humbert. 2005. Variations in the microcystins production of Planktothrix rubescens (cyanobacteria) assessed by a four-years in situ survey of Lac du Bourget (France) and by laboratory experiments. Micro. Ecol. 50:418-428
- Jardillier, L., D. Boucher, S. Personnic, S. Jacquet, A. Thénot, D. Sargos, C. Amblard and D. Debroas. 2005. Relative importance of nutrients and mortality factors on prokaryortic community composition in two lakes of different trophic status: microcosm experiments. FEMS Microb. Ecol. 53:429-443
- Duhamel, S. and S. Jacquet. 2006. Flow cytometric analysis of bacteria and virus-like particles in lakes. J. Microbiol. Methods 64:316-322
- Duhamel, S., I. Domaizon, S. Personnic and S. Jacquet. 2006. Assessing the microbial community dynamics and the role of bacteriophages as mortality agents in Lake Geneva. J. Water Sci. 19:115-126
- Comte, J, S. Jacquet, S. Viboud, D. Fontvieille, G. Paolini and I. Domaizon. 2006. Microbial community structure and dynamics in the largest natural French lake (Lake Bourget, February to July 2002). Microb. Ecol. 52:72-89
- Thingstad, T. F., H Havskum, U. L. Zweifel, E. Berdalet, M. Montserrat Sala, F. Peters, M. Alcaraz, R. Scharek, M. Perez, S. Jacquet, G. A. Fonnes Flaten, J. R. Dolan, C. Marrasé, F. Rassoulzadegan, A. Hagstrøm and D. Vaulot. 2007. Ability of a "minimum" microbial food web model to reproduce response patterns observed in mesocosms manipulated with N and P, glucose, and Si. J. Mar. Syst. 64:15-34
- Jacquet, S., I. Domaizon, S. Personnic and T. Sime-Ngando. Do small grazers influence viral-induced bacterial mortality in Lake Bourget ? Fund. Appl. Limnol. 170: 125-132
- Oberhaus, L., J.-F. Briand, C. Leboulanger, S. Jacquet and J.-F. Humbert. 2007. Comparative effects of the quality and quantity of light and temperature on the growth of Planktothrix agardhii and P. rubescens. J. Phycol. 43:1191-1199
- Danovaro, R., C. Corinaldesi, M. Filippini, U. Fischer, M. O. Gessner, S. Jacquet, M. Magagnini and B. Velimirov. 2008. Viriobenthos in fresh water and marine sediments: a review. Fresh. Biol. 53:1186-1213
- Sime-Ngando, T., J. Colombet, S. Personnic, I. Domaizon, U. Dorigo, P. Perney, J.-C Hustache, E. Viollier and S. Jacquet. 2008. Short-term variations in abundances and potential activities of viruses, bacteria and nanoprotists in Lake Bourget (France). Ecol. Res. 23:851-861
- Middelboe, M., S. Jacquet and M. Weinbauer. 2008. Viruses in freshwater ecosystems: an introduction to the exploration of viruses in new aquatic habitats. Fresh. Biol. 53:1069-1075
- Miki, T. and S. Jacquet.2008. REVIEW. Complex interactions in the microbial world: under-explored key links between viruses, bacteria and protozoan grazers in aquatic environments. Aquat. Microb. Ecol. 51:195-208
- Jacquet, S..2009. Obituary: Bernard Dussart (1922-2008). J. Plank. Res. 31:345-348
- Cellamare, M., A. Rolland and S. Jacquet. 2009. Flow cytometry sorting of freshwater phytoplankton. J. Appl. Phycol. 22:87-100.
- Personnic, S., I. Domaizon, U. Dorigo, L. Berdjeb and S. Jacquet. 2009. Seasonal and spatial variability of virio-, bacterio- and picophytoplankton in three peri-alpine lakes. Hydrobiol. 627:99-116
- Personnic, S., I. Domaizon, T. Sime-Ngando and S. Jacquet. 2009. Seasonal variations of microbial abundances and virus- versus flagellate-induced mortality of picoplankton in three peri-alpine lakes. J. Plank. Res. 31:1161-1177.
- Rolland, A., M. Maury, F. Bertrand and S. Jacquet. 2009. Assessing phytoplankton structure and seasonal dyanmics in a freshwater ecosystem using a new and powerful multitable statistical analysis. Wat. Res. 43:3155-3168
- Berdjeb, L. et S. Jacquet. 2009. La viriosphère : quelle place dans le fonctionnement et l'évolution des écosystèmes aquatiques. Partie 1 ?Virologie 13:133-143.
- Berdjeb, L. et S. Jacquet. 2009. La viriosphère : quelle place dans le fonctionnement et l'évolution des écosystèmes aquatiques. Partie 2 ?Virologie 13:189-199
- Miki, T. and S. Jacquet. Indirect interactions in the microbial world: specificities and similarities to plan-insect systems. Pop. Ecol. (accepted)
- Jacquet, S., T. Miki, R. Noble, P. Peduzzi and S. Wilhelm. 2010. Viruses in aquatic ecosystems: important advancements of the last 20 years and prospects for the future in microbial oceanography and limnology. Adv. Oceanogr. Limnol. 1:71-101
- Bryhn, A.C., C. Girel, G. Paolini and S. Jacquet. 2010. Reconstructing historical phosphorus loadings and predicting future effects from nutrient abatment and climate change on phosphorus concentrations in the largest natural French lake (Lake Bourget). Ecol. Model. 221:1440-1450
- Jacquet, S., P. Nival, L. Prieur and D. Vaulot. 2010. Structure and variability of the microbial community associated to the Alboran Sea from system (Western Mediterranean) in winter. J. Oceanogr. Res. Dev. 3:47-75
- Miki, T. and S. Jacquet. 2010. Indirect interactions in the microbial world: specificities and similarities to plant-insect systems. Pop. Ecol. 52:475-483
- Rolland, A., F. Rimet and S. Jacquet. 2010. A 2-year phytoplanktonic survey in the Reservoir Marne (France): a case study validating the use of a spectrofluorometer by comparison to algal taxonomy and chlorophyll a measurements. Know. Monitor. Aquat. Ecosyst. 398:1-19
- Roland, A. et S. Jacquet. 2010. Classification de l'état écologique du réservoir Marne via l'utilisation de 3 métriques: chlorophylle a, Indice planctonique lacustre et Phosphore total. Hydroecol. Appl. 17:1-12
- Thomas, R., L. Berdjeb, T. Sime-Ngando and S. Jacquet. 2011. Viral abundance, production, decay rates and life strategies (lytic vs. lysogenic) in Lake Bourget. Environ. Microbiol. 13:616-630
- Berdjeb, L., J.F. Ghiglione, I. Domaizon and S. Jacquet. 2011. A 2-year assessment of the main environmental factors driving the free-living bacterial community structure in Lake Bourget (France). Microb. Ecol. 61:941-954
- Berdjeb, L., J.F. Ghiglione and S. Jacquet. 2011. Bottom-up vs. top-down control of hypo- and epilimnion free-living bacterial community stuctures in two neighboring freshwater lakes. Appl. Environ. Microbiol. 77:3591-3599
- Bettarel, Y., T. Bouvier, C. Bouvier, C. Carré, A. Desnues, I. Domaizon, S. Jacquet, A. Robin and T. Sime-Ngando. 2011. Ecological traits of tropical planktonic viruses an,d prokaryotes along a full salinity gradient. FEMS Microb. Ecol. 76: 360-372
- Bouvy, M., Y. Bettarel, C. Bouvier, I. Domaizon, S. Jacquet, E. LeFloc'h, H. Montanié, B. Mostajir, T. Sime-Ngando, J.P. Torréton, F. Vidussi and T. Bouvier. 2011. Trophic interactions between viruses, bacteria and nanoflagellates under various nutrient conditions and simulated climate change. Environ. Microbiol. 13:1842-1857
- Berdjeb, L., I. Domaizon and S. Jacquet. 2011. Effect of grazers and viruses on bacterial community structure and production in two contrasting trophic lakes. BMC Microbiol. 11:88
- Bratbak, G., S. Jacquet, A. Larsen, L. Petterson, A. F. Sazhin and R. Thyrhaug. The plankton community in Norwegian coastal waters - abundance, composition, spatial distribution and diel variation. Cont. Shelf Res. 31:1500-1514
- Buitenhuis, E.T. and 14 co-authors. 2012. Picophytoplankton biomass distribution in the global ocean. Earth Syst. Sci. Data 5:221-242
- Buitenhuis, E.T. and 14 co-authors. 2012. Bacterial biomass distribution in the global ocean. Earth Syst. Sci. Data 5:301-315
- Thomas, R., S. Jacquet, N. Grimsley and H. Moreau. 2012. Strategies and mechanisms of viral resistance in photosynthetic microorganims. Adv. Oceanogr. Limnol. 3:1-15
- Grimsley, N., R. Thomas, J. U. Kegel, S. Jacquet, H. Moreau and Y. Desdevises. 2012. Genomics of algal host-virus interactions. Adv. Bot. Res. 64:343-382
- Jacquet, S., X. Zhong, P. Ammini and A.S. Pradeep-Ram. 2012. First description of a cyanophage infecting the cyanobacterium Arthrospira platensis (Spirulina). J. Appl. Phycol. 25:195-203
- Domaizon, I., C. Lepère, D. Debroas, S. Jacquet, J.F Ghiglione, H. Montanié, M. Bouvy, Y. Bettarel, B. Mostajir and T. Bouvier. 2012. Structuring effects of UV radiations, temperature and nutrient increases on the diversity of small eukaryotes in a Mediterranean coastal lagoon. BMC Microbiol. 12:202
- Ammini, P., X. Zhong and S. Jacquet. 2012. Dynamics of various viral groups infecting autotrophic plankton in Lake Geneva. Adv. Oceanogr. Limnol. 3:171-191
- Jacquet, S., O. Anneville et I. Domaizon. 2012. Evolution de paramètres clefs indicateurs de la qualité des eaux et du fonctionnement écologique des grands lacs péri-alpins (Léman, Bourget, Annecy): Etude comparative de trajectoires de restauration post-eutrophisation. Arch. Sci. 65:225-242
- Zemb, O., M. Manfield, F. Thomas and S. Jacquet. 2013. Phage adsorption to bacteria in the light of the electrostatics: A case study using E. coli, T2 and flow cytometry. J. Virol. Methods 189:283-289
Articles en révision ou soumis en 2013 - Articles in revision or submitted in 2013
- Anneville, A., M. Beniston, N. Gallina, C. Gillet, S. Jacquet et M. Perroud. L'empreinte du changement climatique dans le Léman
- ASTER et al. Sentienl lakes: A network for the study and management of moutain lakes in the French Alps and Corsica
- Berdjeb, L., T. Pollet, C. Chardon and S. Jacquet. Spatio-temporal changes in the structure of archaeal communities in two deep freshwater lakes
- Jacquet, S., I. Domaizon and O. Anneville. The need for ecological monitoring in a changing world: Lakes Annecy, Bourget and Geneva as case studies
- Jacquet, S., C. Chardon, S. Personnic and I. Domaizon. Are grazers a more structuring factor of the bacterial community than viruses in Lake Geneva
- Jacquet, S., U. Dorigo and S. Personnic. A few tests prior analyses of freshwater bacteria and viruses using flow cytometry.
- Jacquet, S. Virus aquatiques. Chapitre d'ouvrage aux Edition Belin (Editeur A. Saib)
- Montuelle, B., O. Anneville, A. Champigneulle, I. Domaizon, J. M. Dorioz, J. Guillard, S. Jacquet and M. E. Perga. Réponses de la biodiversité lacustre au changement global : variabilité à petite échelle et tendances à long terme
- Zhong, X., L. Berdjeb and S. Jacquet. Temporal dynamics and structure of picocyanobacteria and cyanomyoviruses in Lakes Annecy and Bourget
- Zhong, X. and S. Jacquet. Contrasting diversity of phycodnavirus signature genes in two and deep large western European lakes
- Zhong, X. and S. Jacquet. Prevalence of viral photosynthetic and capsid protein genes in two large and deep peri-alpine lakes: a new insignt on the diversity of freshwtaer cyanophages
Articles, Chapitres ou Ouvrages prévus en 2013 - Articles & book chapters or books in 2013