PUBLICATIONS SCIENTIFIQUES - SCIENTIFIC PUBLICATIONS

de 1997 à aujourd'hui ... - From 1997 to now...

La liste de publications ci-dessous permet d’apprécier ma trajectoire en tant que chercheur et les différents types de travaux auxquels j’ai participés. L’ensemble me donne une impression de grande cohérence depuis le temps où, enfant puis adolescent, je regardais à la télévision les aventures du Commandant Cousteau et des membres de la Calypso et décidai alors de devenir biologiste et plongeur. Ma démarche professionnelle globale s’est effectivement toujours inscrite dans ce cadre, ce fil conducteur, d’être un scientifique spécialiste des milieux aquatiques, un écologue et un plongeur scientifique. Recruté à l’INRA en 2001 comme CR2, après une thèse portant sur le phytoplancton marin (1997-2000, Station Biologique de Roscoff) et un post-doctorat en écologie virale aquatique (2000-2001, Bergen, Norvège), je suis aujourd’hui directeur de recherches au sein du CARRTEL à INRAE. Un CV en français est consultable pour en savoir un peu plus sur mon parcours.

The list of publications below allows to appreciate my trajectory as a researcher and the different types of work in which I have participated. The whole gives me an impression of great coherence since the time when, as a child and then as a teenager, I watched on television the adventures of Commander Cousteau (“Captain Planet”) and the members of the Calypso and then decided to become a biologist and a diver. My overall professional approach has indeed always been part of this framework with the goal to be a scientist, specialist of aquatic environments, ecologist and scientific diver. Recruited at INRA in 2001 as a young researcher, after a PhD work on marine phytoplankton (1997-2000, Roscoff Biological Station) and a post-doctoral fellow in aquatic viral ecology (2000-2001, Bergen, Norway), I am now a research director at INRAE CARRTEL. A CV in english is available by simple click.

Articles publiés ou sous presse - Articles published or in press

Marie, D., F. Partensky, S. Jacquet and D. Vaulot. 1997. Enumeration and cell cycle analysis of natural populations of marine picoplankton by flow cytometry using the nucleic acid strain SYBR Green I. Appl. Environ. Microbiol. 63:186-193
Jacquet, S., J.-F. Lennon and D. Vaulot. 1998. Application of a compact automatic sea water sampler to high frequency picoplankton studies. Aquat. Microb. Ecol. 14:309-314
Jacquet, S., J.-F. Lennon, D. Marie and D. Vaulot. 1998. Picoplankton population dynamics in coastal waters of the NW Mediterranean Sea. Limnol. Oceanogr. 43:1916-1931
Christaki, U., S. Jacquet, J. R. Dolan, D. Vaulot and F. Rassoulzadegan. 1999. Growth and grazing on Prochlorococcus and Synechococcus by two marine flagellates. Limnol. Oceanogr. 44:52-62
Jacquet, S. and J.-F. Lennon. 1999. Dynamique haute fréquence des populations picoplanctoniques marines. J. Rech. Océanogr. 24:77-86
Holtzendorff, J., F. Partensky, S. Jacquet, F. Bruyant, D. Marie, L. Garczarek, I. Mary, D. Vaulot and W. R. Hess. 2001. Diel expression of cell cycle-related genes in synchronized cultures of Prochlorococcus sp. strain PCC 9511. J. Bact. 183:915-920
Jacquet, S., F. Partensky, D. Marie, R. Casotti and D. Vaulot. 2001. Cell cycle regulation by light in Prochlorococcus strains. Appl. Environ. Microbiol. 67:782-790
Jacquet, S., F. Partensky, J.-F. Lennon and D. Vaulot. 2001. Diel patterns of growth and division in marine picoplankton in culture. J. Phycol. 37:357-369
Guillou, L., S. Jacquet, M.-J. Chrétiennot-Dinet. 2001. Grazing impact of two small heterotrophic flagellates on Prochlorococcus and Synechococcus. Aquat. Microb. Ecol. 26:201-207
Jacquet, S. 2001. La variabilité physiologique et numérique du picophytoplancton marin à petite échelle de temps. J. Rech. Oceanogr. 26:61-72
Jacquet, S., H. Havskum, F. T. Thingstad and D. Vaulot. 2002. Effects of inorganic and organic nutrient enrichment on a coastal microbial community (Isefjord, Denmark). Mar. Ecol. Progr. Ser. 228:3-14
Jacquet, S., M. Heldal, D. Iglesias-Rodriguez, A. Larsen, W. Wilson and G. Bratbak. 2002. Flow cytometric analysis of an Emiliana huxleyii bloom terminated by viral infection. Aquat. Microb. Ecol. 27:111-124
Jacquet, S., L. Prieur, C. Avois-Jacquet, J.-F. Lennon and D. Vaulot. 2002. Short-timescale variability of picophytoplankton abundance and cellular parameters in surface waters of the Alboran Sea (western Mediterranean). J. Plank. Res. 24:639-655
Leboulanger, C., U. Dorigo, S. Jacquet, B. LeBerre, G. Paolini and J.-F. Humbert. 2002. Application of a submersible spectrofluorometer for rapid monitoring of freshwater cyanobacterial blooms: a case study. Aquat. Microb. Ecol. 30:83-89
Evans, C., S. D. Archer, S. Jacquet and W. H. Wilson. 2003. Direct estimates of the contribution of viral lysis and microzooplankton grazing to the decline of a Micromonas spp. population. Aquat. Microb. Ecol. 30:207-219
Jacquet, S. and G. Bratbak. 2003. Effects of ultraviolet radiation on marine virus-phytoplankton interactions. FEMS Microb. Ecol. 1511:1-11
Briand, J.-F., S. Jacquet, C. Bernard and J.-F. Humbert. 2003. Health hazards for terrestrial vertebrates from toxic cyanobacteria in surface water ecosystems. Review article. Vet. Res. 34:361-378
Muller, F., S. Jacquet and W. H. Wilson. 2003. Biological factors regulating the chemical speciation of Cu, Zn, and Mn under different nutrient regimes in a marine mesocosm experiment. Limnol. Oceanogr. 48: 2289-2302
Larsen, A., G. A. F. Flaten, R. A. Sandaa, T. Castberg, R. Thyrhaug, S. R. Erga, S. Jacquet and G. Bratbak. 2004. Spring phytoplankton bloom dynamics in Norwegian coastal waters: Microbial community succession and diversity. Limnol. Oceanogr. 49:180-190
Engel, A., B. Delille, S. Jacquet, U. Riebesell, E. Rochelle-Newall, A. Terbrüggen and I. Zondervan. 2004. TEP and DOC production by Emiliana huxleyi exposed to different CO2 concentrations: A mesocosm experiment. Aquat. Microb. Ecol. 34:1-13
Dorigo, U., S. Jacquet and J.-F. Humbert. 2004. Cyanophage diversity, inferred from g20 gene analyses, in the largest natural lake in France, Lake Bourget. Appl. Environ. Microbiol. 70: 1017-1022
Rochelle-Newall, E., B. Delillie, M. Frankignoulle, J.-P. Gattuso, S. Jacquet, U. Riebesell, A. Terbruggen and I. Zondervan. 2004. Chromophoric dissolved organic matter in experimental mesocosms maintained under different pCO2 levels. Mar. Ecol. Progr. Ser. 272:25-31
Havskum, H., L. Schlüter, R. Scharek, E. Berdalet and S. Jacquet. 2004. Routine quantification of phytoplankton groups : microscopy or pigment analyses. Mar. Ecol. Progr. Ser. 273:31-42
Jacquet, S., I. Domaizon, S. Personnic, S. Duhamel, M. Heldal, A. S. Pradeep Ram and T. Sime-Ngando. 2005. Estimates of protozoan and virus-mediated mortality of bacterioplankton in Lake Bourget (France). Fresh. Biol. 50:627-645
Jacquet, S., J.-F. Briand, C. Leboulanger, C. Avois-Jacquet, L. Oberhaus, B. Tassin, B. Vinçon-Leite, G. Paolini, J.-C. Druart, O. Anneville and J.-F. Humbert. 2005. The proliferation of the toxic cyanobacterium Planktothrix rubescens following restoration of the largest natural French lake (Lac du Bourget). Harmful Algae 4:651-672
Delille, B., J. Harlay, I. Zondervan,S. Jacquet, L. Chou, R. Wollast, M. Frankignoulle, A. Vieria Borges, U. Riebesell and J.-P. Gattuso. 2005. Response of primary production and calcification to changes of pCO2 during experimental blooms of the coccolithophorid Emiliana huxleyi. Global Biogeochemical Cycles 19 (2023):1-14
Engel, A., I. Zondervan, K. Aerts, A. Benthien, L. Chou, B. Delille, J.-P. Gattuso, J. Harlay, C. Heemann, L. Hoffmann, S. Jacquet, J. Nejstraard, M.-D. Pizay, E. Rochelle-Newall, U. Schneider; A. Terbrueggen and U. Riebesell. 2005. Testing the direct effect of CO2 conentration on a bloom of the coccolithophorid Emiliana huxleyi in mesocosm experiments. Limnol. Oceanogr. 50:493-507
Briand, J.-F., S. Jacquet, C. Flinois, C. Avois-Jacquet, C. Maisonnette, B. Leberre, and J.-F. Humbert. 2005. Variations in the microcystins production of Planktothrix rubescens (cyanobacteria) assessed by a four-years in situ survey of Lac du Bourget (France) and by laboratory experiments. Micro. Ecol. 50:418-428
Jardillier, L., D. Boucher, S. Personnic, S. Jacquet, A. Thénot, D. Sargos, C. Amblard and D. Debroas. 2005. Relative importance of nutrients and mortality factors on prokaryortic community composition in two lakes of different trophic status: microcosm experiments. FEMS Microb. Ecol. 53:429-443
Duhamel, S. and S. Jacquet. 2006. Flow cytometric analysis of bacteria and virus-like particles in lakes. J. Microbiol. Methods 64:316-322
Duhamel, S., I. Domaizon, S. Personnic and S. Jacquet. 2006. Assessing the microbial community dynamics and the role of bacteriophages as mortality agents in Lake Geneva. J. Water Sci. 19:115-126
Comte, J, S. Jacquet, S. Viboud, D. Fontvieille, G. Paolini and I. Domaizon. 2006. Microbial community structure and dynamics in the largest natural French lake (Lake Bourget, February to July 2002). Microb. Ecol. 52:72-89
Thingstad, T. F., H Havskum, U. L. Zweifel, E. Berdalet, M. Montserrat Sala, F. Peters, M. Alcaraz, R. Scharek, M. Perez, S. Jacquet, G. A. Fonnes Flaten, J. R. Dolan, C. Marrasé, F. Rassoulzadegan, A. Hagstrøm and D. Vaulot. 2007. Ability of a "minimum" microbial food web model to reproduce response patterns observed in mesocosms manipulated with N and P, glucose, and Si. J. Mar. Syst. 64:15-34
Jacquet, S., I. Domaizon, S. Personnic and T. Sime-Ngando. Do small grazers influence viral-induced bacterial mortality in Lake Bourget ? Fund. Appl. Limnol. 170: 125-132
Oberhaus, L., J.-F. Briand, C. Leboulanger, S. Jacquet and J.-F. Humbert. 2007. Comparative effects of the quality and quantity of light and temperature on the growth of Planktothrix agardhii and P. rubescens. J. Phycol. 43:1191-1199
Danovaro, R., C. Corinaldesi, M. Filippini, U. Fischer, M. O. Gessner, S. Jacquet, M. Magagnini and B. Velimirov. 2008. Viriobenthos in fresh water and marine sediments: a review. Fresh. Biol. 53:1186-1213
Sime-Ngando, T., J. Colombet, S. Personnic, I. Domaizon, U. Dorigo, P. Perney, J.-C Hustache, E. Viollier and S. Jacquet. 2008. Short-term variations in abundances and potential activities of viruses, bacteria and nanoprotists in Lake Bourget (France). Ecol. Res. 23:851-861
Middelboe, M., S. Jacquet and M. Weinbauer. 2008. Viruses in freshwater ecosystems: an introduction to the exploration of viruses in new aquatic habitats. Fresh. Biol. 53:1069-1075
Miki, T. and S. Jacquet.2008. REVIEW. Complex interactions in the microbial world: under-explored key links between viruses, bacteria and protozoan grazers in aquatic environments. Aquat. Microb. Ecol. 51:195-208
Jacquet, S..2009. Obituary: Bernard Dussart (1922-2008). J. Plank. Res. 31:345-348
Cellamare, M., A. Rolland and S. Jacquet. 2009. Flow cytometry sorting of freshwater phytoplankton. J. Appl. Phycol. 22:87-100.
Personnic, S., I. Domaizon, U. Dorigo, L. Berdjeb and S. Jacquet. 2009. Seasonal and spatial variability of virio-, bacterio- and picophytoplankton in three peri-alpine lakes. Hydrobiol. 627:99-116
Personnic, S., I. Domaizon, T. Sime-Ngando and S. Jacquet. 2009. Seasonal variations of microbial abundances and virus- versus flagellate-induced mortality of picoplankton in three peri-alpine lakes. J. Plank. Res. 31:1161-1177.
Rolland, A., M. Maury, F. Bertrand and S. Jacquet. 2009. Assessing phytoplankton structure and seasonal dyanmics in a freshwater ecosystem using a new and powerful multitable statistical analysis. Wat. Res. 43:3155-3168
Berdjeb, L. et S. Jacquet. 2009. La viriosphère : quelle place dans le fonctionnement et l'évolution des écosystèmes aquatiques. Partie 1 ?Virologie 13:133-143.
Berdjeb, L. et S. Jacquet. 2009. La viriosphère : quelle place dans le fonctionnement et l'évolution des écosystèmes aquatiques. Partie 2 ?Virologie 13:189-199
Jacquet, S., T. Miki, R. Noble, P. Peduzzi and S. Wilhelm. 2010. Viruses in aquatic ecosystems: important advancements of the last 20 years and prospects for the future in microbial oceanography and limnology. Adv. Oceanogr. Limnol. 1:71-101
Bryhn, A.C., C. Girel, G. Paolini and S. Jacquet. 2010. Reconstructing historical phosphorus loadings and predicting future effects from nutrient abatment and climate change on phosphorus concentrations in the largest natural French lake (Lake Bourget). Ecol. Model. 221:1440-1450
Jacquet, S., P. Nival, L. Prieur and D. Vaulot. 2010. Structure and variability of the microbial community associated to the Alboran Sea from system (Western Mediterranean) in winter. J. Oceanogr. Res. Dev. 3:47-75
Miki, T. and S. Jacquet. 2010. Indirect interactions in the microbial world: specificities and similarities to plant-insect systems. Pop. Ecol. 52:475-483
Rolland, A., F. Rimet and S. Jacquet. 2010. A 2-year phytoplanktonic survey in the Reservoir Marne (France): a case study validating the use of a spectrofluorometer by comparison to algal taxonomy and chlorophyll a measurements. Know. Monitor. Aquat. Ecosyst. 398:1-19
Roland, A. et S. Jacquet. 2010. Classification de l'état écologique du réservoir Marne via l'utilisation de 3 métriques: chlorophylle a, Indice planctonique lacustre et Phosphore total. Hydroecol. Appl. 17:1-12
Thomas, R., L. Berdjeb, T. Sime-Ngando and S. Jacquet. 2011. Viral abundance, production, decay rates and life strategies (lytic vs. lysogenic) in Lake Bourget. Environ. Microbiol. 13:616-630
Berdjeb, L., J.F. Ghiglione, I. Domaizon and S. Jacquet. 2011. A 2-year assessment of the main environmental factors driving the free-living bacterial community structure in Lake Bourget (France). Microb. Ecol. 61:941-954
Berdjeb, L., J.F. Ghiglione and S. Jacquet. 2011. Bottom-up vs. top-down control of hypo- and epilimnion free-living bacterial community stuctures in two neighboring freshwater lakes. Appl. Environ. Microbiol. 77:3591-3599
Bettarel, Y., T. Bouvier, C. Bouvier, C. Carré, A. Desnues, I. Domaizon, S. Jacquet, A. Robin and T. Sime-Ngando. 2011. Ecological traits of tropical planktonic viruses an,d prokaryotes along a full salinity gradient. FEMS Microb. Ecol. 76: 360-372
Bouvy, M., Y. Bettarel, C. Bouvier, I. Domaizon, S. Jacquet, E. LeFloc'h, H. Montanié, B. Mostajir, T. Sime-Ngando, J.P. Torréton, F. Vidussi and T. Bouvier. 2011. Trophic interactions between viruses, bacteria and nanoflagellates under various nutrient conditions and simulated climate change. Environ. Microbiol. 13:1842-1857
Berdjeb, L., I. Domaizon and S. Jacquet. 2011. Effect of grazers and viruses on bacterial community structure and production in two contrasting trophic lakes. BMC Microbiol. 11:88
Bratbak, G., S. Jacquet, A. Larsen, L. Petterson, A. F. Sazhin and R. Thyrhaug. The plankton community in Norwegian coastal waters - abundance, composition, spatial distribution and diel variation. Cont. Shelf Res. 31:1500-1514
Buitenhuis, E.T. and 14 co-authors. 2012. Picophytoplankton biomass distribution in the global ocean. Earth Syst. Sci. Data 5:221-242
Buitenhuis, E.T. and 14 co-authors. 2012. Bacterial biomass distribution in the global ocean. Earth Syst. Sci. Data 5:301-315
Thomas, R., S. Jacquet, N. Grimsley and H. Moreau. 2012. Strategies and mechanisms of viral resistance in photosynthetic microorganims. Adv. Oceanogr. Limnol. 3:1-15
Grimsley, N., R. Thomas, J. U. Kegel, S. Jacquet, H. Moreau and Y. Desdevises. 2012. Genomics of algal host-virus interactions. Adv. Bot. Res. 64:343-382
Jacquet, S., X. Zhong, A. Parvathi and A.S. Pradeep-Ram. 2012. First description of a cyanophage infecting the cyanobacterium Arthrospira platensis (Spirulina). J. Appl. Phycol. 25:195-203
Domaizon, I., C. Lepère, D. Debroas, S. Jacquet, J.F Ghiglione, H. Montanié, M. Bouvy, Y. Bettarel, B. Mostajir and T. Bouvier. 2012. Structuring effects of UV radiations, temperature and nutrient increases on the diversity of small eukaryotes in a Mediterranean coastal lagoon. BMC Microbiol. 12:202
Parvathi, A., X. Zhong and S. Jacquet. 2012. Dynamics of various viral groups infecting autotrophic plankton in Lake Geneva. Adv. Oceanogr. Limnol. 3:171-191
Jacquet, S., O. Anneville et I. Domaizon. 2012. Evolution de paramètres clefs indicateurs de la qualité des eaux et du fonctionnement écologique des grands lacs péri-alpins (Léman, Bourget, Annecy): Etude comparative de trajectoires de restauration post-eutrophisation. Arch. Sci. 65:225-242
Montuelle, B., O. Anneville, A. Champigneulle, I. Domaizon, J. M. Dorioz, J. Guillard, S. Jacquet and M. E. Perga. 2012. Réponses de la biodiversité lacustre au changement global : variabilité à petite échelle et tendances à long terme. Inn. Agro. 23:3-18
Zemb, O., M. Manfield, F. Thomas and S. Jacquet. 2013. Phage adsorption to bacteria in the light of the electrostatics: A case study using E. coli, T2 and flow cytometry. J. Virol. Methods 189:283-289
Jacquet, S., I. Domaizon, C. Chardon and S. Personnic. 2013. Are small grazers and/or viruses a structuring factor of the free-living bacterial community in Lake Geneva? Adv. Microbiol. 3:233-248
Birck et al. 2013. Sentinel lakes: A network for the study and management of moutain lakes in the French Alps and Corsica. Eco. Mount. 5:61-68
Berdjeb, L., T. Pollet, C. Chardon and S. Jacquet. 2013. Spatio-temporal changes in the structure of archaeal communities in two deep freshwater lakes. FEMS Microb. Ecol. 86:215-230
Jacquet, S., U. Dorigo and S. Personnic. 2013. A few tests prior to flow cytometry and epifluorescence analyses of freshwater bacterio- and virioplankton communities. Chapter book 1 in Nova Publishers
Zhong, X., L. Berdjeb and S. Jacquet. 2013. Temporal dynamics and structure of picocyanobacteria and cyanomyoviruses in Lakes Annecy and Bourget. FEMS Microb. Ecol. 86:312-326
Zhong, X. and S. Jacquet. 2013. Prevalence of viral photosynthetic and capsid protein genes from cyanophages in two large and deep peri-alpine lakes. Appl. Environ. Microbiol. 79:7169-7178
Anneville, A., M. Beniston, N. Gallina, C. Gillet, S. Jacquet, J. Lazzarotto et M. Perroud. 2013. L'empreinte du changement climatique dans le Léman. Arch. Sci. 66:157-172
Zhong, X., A.S. Pradeep Ram, J. Colombet and S. Jacquet. 2014. Variations in abundance, genome size, morphology and functional role of the virioplankton in Lakes Annecy and Bourget over a 1-year period. Microb. Ecol. 67:66-82
Zhong, X. and S. Jacquet. 2014. Contrasting diversity of phycodnavirus signature genes in two and deep large western European lakes. Environ. Microbiol. 16:759-773
Jacquet, S., I. Domaizon and O. Anneville. 2014. The need for ecological monitoring of freshwaters in a changing world: A case studies of Lakes Annecy, Bourget and Geneva. Environ. Monitor. Assess. 186:3455-3476
Zhong, X., F. Rimet and S. Jacquet. 2014. Seasonal variations in PCR-DGGE fingerprinted viruses infecting phytoplankton in large and deep peri-alpine lakes. Ecol. Res. 29:271-287
Parvathi, A., X. Zhong, A.S. Pradeep Ram and S. Jacquet. 2014. Dynamics of auto- and heterotrophic picoplankton and associated viruses in Lake Geneva. Hydrol. Earth Syst. Sci. 18:1073-1087
Zhong, X. and S. Jacquet. Differing assemblage composition and dynamics in T4-like myophages of two neighbouring sub-alpine lakes. Fresh. Biol. 59:1577-1595
Jacquet, S., O. Kerimoglu, F. Rimet, G. Paolini and O. Anneville. 2014. Cyanobacterial bloom termination: the disappearance of Planktothrix rubescens from Lake Bourget after restoration. Fresh. Biol. 59:2472-2489
Jacquet, S. et K.J. Parikka. 2014. VOM3: Virus de microbes, structures et fonctions, de la molécule à l'échelle des communautés. Virologie 18:297-300
Jacquet, S. 2014. Cyanobacterial harmful algal bloom: Legends of the fall ... die hard! An Answer in Science 346 (October 2014)
Ben Rhomdame, S., M. el Bour, A. Hamza, F. Akrout, M. Mejdeddine Kraiem and S. Jacquet. 2014. Seasonal patterns of viral, microbial and planktonic communities in Sidi Salem: a freshwater reservoir (North of Tunisia). Int. J. Limnol. 50:299-314
Anneville, O., I. Domaizon, O. Kerimoglu, F. Rimet and S. Jacquet. 2015. Blue-greens in a greenhouse century? New insights from field data of climate changes on cyanobacterial abundnances. Ecosystems 18:441-458
Zhong, X., B. Guidoni, L. Jacas and S. Jacquet. 2015. Structure and diversity of ssDNA Microviridae viruses in two peri-alpine lakes (Annecy and Bourget, France). Research in Microbiology 166:644-654
Fontvieille, J., S. Reynaud, S. Jacquet, B. LeBerre and C. Ferrier-Pages. 2015. First evidence of an important organic matter trophy pathway between temperate corals and pelagic microbial communities. Plos One 10(10): e0139175
Meunier, A. and S. Jacquet. 2015. Do phages impact microbial dynamics, prokaryotic community structure and nutrient dynamics in Lake Bourget? Biology Open doi:10.1242/bio.013003
Jacquet, S. 2016. Obituary: Gérard Balvay (1944-2015). International Journal of Limnology 52:33-34
Parikka, K.J., M. LeRomancer, N. Wauters and S. Jacquet. 2017. Deciphering the virus-to-prokaryote ratio (VPR) : Insights into virus-host relationships in a variety of ecosystems. Biological Reviews 92:1081-1100
Gallina, N., M. Beniston and S. Jacquet. 2017. Estimating future cyanobacterial occurrence and importance in lakes: A case study with P. rubescens in Lake Geneva. Aquatic Sciences 79:249-263
Jurkevitch, E. et S. Jacquet. 2017. Bdellovibrio et organismes apparentés: des prédateurs bactériens hors du commun! Médecine/Sciences 33
Blottière, L., M. Jaffar-Bandjee, S. Jacquet, A. Millot and F. Hulot. 2017. Effect of mixing on the pelagic food web in shallow lakes. Freshwater Biology 62:161-177
Démory, D., L. Arsenieff, N. Simon, C. Six, F. Rigault-Jalabert, D. Marie, P. Ge, E. Bigeard, S. Jacquet, A. Sciandra, O. Bernard, S. Rabouille and A.-C. Baudoux. 2017. Temperature is a key factor in Micromonas-virus interactions. The Isme Journal 11:601-612
Courtial, L., C. Ferrier-Pages, S. Jacquet, R. Rodolfo Metalpa, S. Reynaud, C. Rottier and F. Houlbrèque. 2017. Temperature and UV effects on the organic matter fluxes and metabolic activity of Acropora muricata. Biology Open 6:1190-1199
Kerimoglu, O., S. Jacquet, B. Vinçon-Leite, B. Lemaire, F. Rimet, F. Soulignac, D. Trévisan and O. Anneville. 2017. Modeling the plankton groups of the deep peri alpine Lake Bourget. Ecological Modeling 359:415-433
Leach, T. and co-authors. 2017. Patterns and drivers of deep chlorophyll maxima structure in 100 lakes: the relative importance of light and thermal stratification. Limnology & Oceanography 63:628-646
Rivera Rocabado, S., V. Vasselon, S. Jacquet, A. Bouchez, D. Ariztegui and F. Rimet. 2018. Metabarcoding of lake benthic diatoms: from structure assemblages to ecological assessment. Hydrobiologia 807:37-51
Pollet, T., L. Berdjeb, C. Chardon and S. Jacquet. 2018. Dynamics of ammonia oxidizing archaeal communities and distribution of AOA gene in two contrasting lakes. Aquatic Microbial Ecology 81:95-108
Parikka, K.J., S. Jacquet and M. LeRomancer. 2018. Abundances of the thermophilic viral communities of the hot springs of the French Southern and Antarctic lands. Polar Biology 41:1335-1352
Vasselon, V., A. Bouchez, F. Rimet, S. Jacquet, R. Trobajo, M. Corniquel, K. Tapolczai and I. Domaizon. 2018. Avoiding quantification bias in metabarcoding : Application of a cell biovolume correction factor in diatom molecular biomonitoring. Methods in Ecology & Evolution 9:1060-1069
Lefrançois, E et al. 2018. Development and implementation of eco-genomic tools for aquatic ecosystem biomonitoring: The SYNAQUA French Swiss Program. Environmental Science and Pollution Research 25:33858-33866
Zhong, X., C. Suttle, E. Derelle, Y. Desdevises, A.-C. Baudoux, J. Colombet, C. Six and S. Jacquet. 2018. A new freshwater cyanosiphovirus harbouring integrase. Frontiers in Microbiology 9 article 2204
van der Water, JAJM, L. Courtial, F. Houlbrèque, S. Jacquet and C. Ferrier-Pages. 2018. UVR has a limited impact on seasonal diffrences in Acropora muricata holobiont. Frontiers in Marine Science 5 article 275
Ezzedine, J. et S. Jacquet. 2019. Bactéries prédatrices: zoom sur les Bdellovibrio et organismes apparentés (BALOs). Notes Académiques de l'Académie d'Agriculture de France 2:1-25.
Paix, B., J. Ezzedine and S. Jacquet. Diversity, dynamics and distribution of Bdellovibrio and like organisms in peri-alpine lakes. Applied and Environmental Microbiology 85:e02494-18
Weyhenmeyer et al. 2019. Widespread diminishing anthropogenic effects on calcium in freshwaters. Scientific report 9: e10450 (2019)
Ezzedine, J., L. Jacas, Y. Desdevises and S. Jacquet. 2020. Bdellovibrio and like organisms in Lake Geneva : An unseen elephant in the room? Frontiers in Microbiology 11 Article 98
Ezzedine, J., G. Pavard, M. Gardillon and S. Jacquet. 2020. Bdellovibrio sp: An important bacterial predator in Lake Geneva ? Journal of Microbiology and Biotechnology
Rimet et al. 2020. The Observatory on LAkes (OLA) database : Sixty years of environmental data accessible to the public. J. Limnol. 79(2): 164-178
Jenny, J-P. et al. 2020. Scientist's warning to humanity: Rapid degradation of the world's large lakes. J. Great Lake Res. DOI 10. 1016/j.jglr.2010.05.006
Ezzedine, J., C. Chardon and S. Jacquet. 2020. New 16S rRNA primers to uncover Bdellovibrio and like organisms diversity and abundance. J. Microb. Methods 175: 105996
Ezzedine, J., Y. Desdevises and S. Jacquet. Exploring archaeal and bacterial diversity and interactions in Lake Geneva. Adv. Oceanogr. Limnol. 11, 2
Tran-Kahc, V et al. 2020. In situ pelagic dataset from continuous monitoring: a mescosm experiment in Lake Geneva (MESOLAC). Data in Brief 3, 106255
Derot, J., H. Yajima and S. Jacquet. 2020. Advances in forecasting harmful algal blooms using machine learning models: A case study with Planktothrix rubescens in Lake Gevena. Harmful Algae 99, 101906
Blanco-Ameijeiras, S. et al. 2020. Exopolymeric substances control microbial community structure and function by contributing to both C and Fe nutrition in Fe-limited southern ocean provinces. Microorganisms 8, 1980
Doubek et al. 2021. The extent and variability of storm-induced temperature changes in lakes worldwide using long-term and high frequency data. Limnology & Oceanography 66:1979-1992
Lyautey, E., E. Billard, N. Tissot, S. Jacquet and I. Domaizon. 2021. Seasonal dynamics of abundance, structure and diversity of methanogens and methanotrophs in lake sediments. Microbial Ecology 2021 doi.org/10.1007/s00248-021-01689-9
Tran-Kach et al. 2021. Physico-chemical dataset from an in situ mesocosm experiment simulating extreme climate events in Lake Geneva (MESOLAC). Data in Brief 36:107150

Articles acceptés, en révision ou soumis en 2021 - Articles accepted, in revision or submitted in 2021

Ezzedine, J., Y. Desdevises and S. Jacquet. 2021. Bdellovibrio and like organisms: Current understanding and knowledge gaps of the smallest cellular hunters of the microbial world. Critical Reviews on Microbiology (accepted)
Ezzedine, J., A. Janicot, S. Rasconi, I. Domaizon and S. Jacquet. 2021. Short-term dynamics of Bdellovibrio and like organisms in Lake Geneva in response to a simulated climatic extreme event. Microbial Ecology (accepted)
Moiron, M., C. Girel, F. Rimet and S. Jacquet. 2021. Die hard in Lake Bourget! The case of Planktothrix rubescens reborn. International Journal of Limnology (accepted)

Prévus en 2021-2022 - Forthcoming in 2021-2022

Chiapusio, G., I. Domaizon, F. Arthaud and S. Jacquet. Allelopathic effects on different freshwater phytoplankters and macrophytes.
Ezzedine, J., M. Scheifler, Y. Desdevises and S. Jacquet. Exploring the diversity, abundance and structure of Bdellovibrio and like organisms in contrasted ecosystems.
Florent, P., H.-M. Cauchie, S. Jacquet and L. Ogorzaly. Diversity of the indigeneous DNA-bacteriophage populations in Luxembourgish forest and grassland soils: influence of the soil properties and soil-born bacteria.
Jacquet, S. Picocyanobacterial dynamics and diversity in peri-alpine lakes
Jacquet, S. and F. Rimet. Restoration of the largest natural lake in France ( Lake Bourget) assessed through PE-rich phytoplankton groups.
Grandrémy, N., V. Frossard, J. Guillard, F. Arthaud and S. Jacquet. Evidence of ecological shifts in fresh water ecosystems: A case study in Lake Bourget.
Divers (vulgarisation, prix, intervention, rapports scientifiques, chapitres d'ouvrage)